PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000928958
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YB
Protein Properties Length: 187aa    MW: 19584.7 Da    PI: 7.5741
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000928958genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB166.92.6e-5220111297
          NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                    reqdr+lPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplk    ++re+egek
  MDP0000928958  20 REQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK----RFREMEGEK 111
                    89*******************************************************************************86....789999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.9E-5014120IPR009072Histone-fold
SuperFamilySSF471138.23E-3722118IPR009072Histone-fold
PfamPF008081.0E-272589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-175371No hitNo description
PROSITE patternPS0068505672IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-177290No hitNo description
PRINTSPR006151.3E-1791109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MADSDNDSGG AHGKSELSPR EQDRLLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF  60
ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEEYVEP LKRFREMEGE KSSVAARDKD  120
GSGGGIGGVG YERGGGGGGG SSGGAGVYWQ QQHQGHVYGG SGFHQMGVSG VGMGKSGPGS  180
NMGRPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_A6e-4317106194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4awl_B6e-4317106194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876633e-76KC787663.1 Brassica napus transcription factor subunit NF-YB3B (NF-YB3B) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008349882.11e-109PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit B-3-like
SwissprotO233101e-67NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLM5WHU04e-89M5WHU0_PRUPE; Uncharacterized protein
STRINGGLYMA18G08620.12e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.15e-69nuclear factor Y, subunit B3